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Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

4 mentions on Hacker News by 4 people: 0 stories, 4 comments · first 2020-05-19 · latest 2022-10-11

Mentions per year 4 mentions · busiest year 2022 (2)
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  1. …https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/146/045/GCF... Install an alignment tool like bwa: https://github.com/lh3/bwa Unzip the the genome file and create a bwa index: gunzip GCF_000146045.2_R64_genomic.fna.gz && bwa index…
    comment by aaauaucuggaa · 2022-10-11 · in Scientists are finding fungi in cancerous tumors
  2. This is used in both bwa [1] and bowtie [2], two of the most popular DNA sequence aligners. [1] https://github.com/lh3/bwa [2] https://github.com/BenLangmead/bowtie
    comment by tdido · 2022-09-24 · in Burrows–Wheeler Transform
  3. …verifying how correct it is, is not hard (I think). Maybe we should ask the BWA devs [0]. [0]: https://github.com/lh3/bwa
    comment by teekert · 2021-12-08 · in RNA Takes Over
  4. …BWA performs a large percent of all sequence alignments worldwide. [0] http://www.liheng.org [1] https://github.com/lh3/bwa
    comment by ibiza · 2020-05-19 · in Fast high-level programming languages