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lh3/bioawk

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BWK awk modified for biological data

5 mentions on Hacker News by 4 people: 1 story, 4 comments · first 2018-06-16 · latest 2024-03-31

Mentions per year 5 mentions · busiest year 2018 (3)
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  1. …bioinformatics that natively knows how to handle fasta, fastq, and sam files, among other formats. https://github.com/lh3/bioawk
    comment by jhbadger · 2021-09-07 · in Awk: The Power and Promise of a 40-Year-Old Language
  2. Bioawk: https://github.com/lh3/bioawk This tool is based on Awk programming language which makes it familiar plus it fast and helps to deal with sequencing data. Another tool I like is bedtools: https://github.com/arq5x/bedtools2
    comment by kasperset · 2018-12-02 · in Ask HN: Favourite command line applications?
  3. …the advantage of being installed on all POSIX systems, for bioinformatics there's a nifty bioawk ( https://github.com/lh3/bioawk ) that extends awk so that records aren't necessarily lines but fasta/fastq records as well. Pretty neat for…
    comment by jhbadger · 2018-06-16 · in Learn just a little Awk (2010)
  4. https://github.com/lh3/bioawk
    comment by bsg75 · 2018-06-16 · in Learn just a little Awk (2010)