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bioperl/bioperl-live

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Core BioPerl 1.x code

4 mentions on Hacker News by 3 people: 0 stories, 4 comments · first 2013-05-05 · latest 2020-05-13

Mentions per year 4 mentions · busiest year 2013 (1)
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  1. …reading the bioperl code back to read FASTA files around Y2K. Their technique is still in use, at https://github.com/bioperl/bioperl-live/blob/master/lib/Bio/... . The key point is they set the input record separator, like this: local $/ =…
    comment by dalke · 2020-05-13 · in Reading DNA and Count Bases in Raku – Suman Khanal
  2. …/blast+/LATEST/ncbi-blast-2.2.30+-src.zip BFAST C http://sourceforge.net/projects/bfast/ BioPerl Perl https://github.com/bioperl/bioperl-live Bowtie C++, C http://sourceforge.net/projects/bowtie-bio/files/bowtie/ Clustal C, C++…
    comment by runlevel1 · 2015-05-02 · in Evaluation of C, Go, and Rust in the HPC environment [pdf]
  3. …would break if you give it a FASTA file with a comment. For example, the BioPerl FASTA parser is at https://github.com/bioperl/bioperl-live/blob/master/Bio/SeqI... , where you can see it doesn't support a comment. Since the chance of…
    comment by dalke · 2014-12-15 · in Bioinformatics and the joy of Perl6
  4. …111 stars and 57 forks for BioPerl while there are 350 stars and 179 forks for BioPython. BioPerl: https://github.com/bioperl/bioperl-live BioPython: https://github.com/biopython/biopython
    comment by kevinwuhoo · 2013-05-05 · in How Perl Saved the Human Genome Project (1996)