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bigdatagenomics/adam

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ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

10 mentions on Hacker News by 5 people: 0 stories, 10 comments · first 2015-05-07 · latest 2022-10-05

Mentions per year 10 mentions · busiest year 2015 (3)
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  1. …is a good idea, especially with DuckDB, Apache Arrow, etc. supporting Parquet out of the box. 0 - https://github.com/bigdatagenomics/adam 1 - https://github.com/bigdatagenomics/bdg-formats
    comment by heuermh · 2022-10-05 · in Advanced Scientific Data Format
  2. …file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed. https://github.com/bigdatagenomics/adam
    comment by heuermh · 2021-09-16 · in Seq – A programming language for computational genomics and bioinformatics
  3. Hello! I'm wondering if you came across our suite of libraries and tools for doing Genomics on Spark? https://github.com/bigdatagenomics/adam We've fallen off the first Google hit the past few years but are still quite relevant (e.g.…
    comment by heuermh · 2019-06-27 · in Using AWK and R to parse 25TB
  4. I feel like ADAM ( https://github.com/bigdatagenomics/adam ) is a huge step in the right direction. You convert from standard genomics format to Parquet and then work with the resulting data in spark with genomics-specific libraries. My…
    comment by dekhn · 2019-05-17 · in Genomics – A programmer’s guide
  5. …saying these clearly argue for one side or the other: Here is the Maven POM for ADAM's core module: https://github.com/bigdatagenomics/adam/blob/adam-parent_2.1... and its parent POM: https://github.com/bigdatagenomics/adam/blob/adam-parent…
    comment by rdubz · 2017-04-06 · in Building Scala Projects: Maven vs. SBT
  6. …Open Bioinformatics Foundation (OBF)[1] projects could use a hand, open source licenses vary. [0] - https://github.com/bigdatagenomics/adam [1] - https://www.open-bio.org/wiki/Main_Page
    comment by heuermh · 2016-10-04 · in I'm choosing euthanasia etd 1pm. I have no last words.
  7. …worked currently by UC Berkeley AMPLab and Microsoft Research group focused on cancer research) https://github.com/bigdatagenomics/adam/labels/pick%20me%20u... BioConductor (R package that is very popular for crunching different genomic…
    comment by noname123 · 2016-10-04 · in I'm choosing euthanasia etd 1pm. I have no last words.
  8. …a newer data-set. 3) Contribute to a open source informatics toolchain used for the subject (e.g., https://github.com/bigdatagenomics/adam )
    comment by noname123 · 2015-11-24 · in What can a technologist do about climate change?
  9. …analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. https://github.com/bigdatagenomics/adam
    comment by heuermh · 2015-11-14 · in The impact of Docker containers on the performance of genomic pipelines
  10. Yes indeed. And new tools are being written - see the Adam project for an interesting example: https://github.com/bigdatagenomics/adam and the associated variant caller Avocado: https://github.com/bigdatagenomics/avocado . Others are also…
    comment by dunk010 · 2015-05-07 · in IBM's Watson will be used to make decisions about cancer care in 14 hospitals