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DarwinAwardWinner/CD4-csaw

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Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set

4 mentions on Hacker News by 2 people: 0 stories, 4 comments · first 2017-01-09 · latest 2022-08-16

Mentions per year 4 mentions · busiest year 2017 (2)
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  1. …builds my resume PDF from the LyX source. [1]: https://snakemake.readthedocs.io/en/stable/ [2]: https://github.com/DarwinAwardWinner/CD4-csaw [3]: https://github.com/DarwinAwardWinner/resume/blob/main/Snakef...
    comment by rcthompson · 2022-08-16 · in Tup – an instrumenting file-based build system
  2. …way to produce an HTML report containing code, exposition, results, and plots all in one place. https://github.com/DarwinAwardWinner/CD4-csaw (look at scripts/*.Rmd)
    comment by rcthompson · 2018-02-20 · in JupyterLab is ready for users
  3. …that you could use snakemake subworkflows [1] for this issue of "pre-workflow" workflows. [0] https://github.com/DarwinAwardWinner/CD4-csaw/blob/master/pr... [1] https://bitbucket.org/snakemake/snakemake/wiki/Documentation...
    comment by elsherbini · 2017-01-09 · in Dgsh – Directed graph shell
  4. …of ugly hack ot make it work with Snakemake, a Python Makefile-style "DAG-of-rules" workflow tool: https://github.com/DarwinAwardWinner/CD4-csaw Basically, I need to first fetch the metadata on all the samples, and then later group them by…
    comment by rcthompson · 2017-01-09 · in Dgsh – Directed graph shell